PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn081661
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 153aa    MW: 17085.4 Da    PI: 6.0812
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn081661genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.92e-306931100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa+vhk            +lp+++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++
  Achn081661   6 PCASCKLLRRRCVKDCIFAPYFPSDDPQKFAMVHK------------ELPDHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQA 92 
                 7********************************96............99***********************************************998 PP

      DUF260 100 e 100
                 e
  Achn081661  93 E 93 
                 7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.228594IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-29691IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGGNSPCASC KLLRRRCVKD CIFAPYFPSD DPQKFAMVHK ELPDHQRADA VSSLVYEANA  60
RVRDPVYGCV GAISYLQNQV SQLQMQLAVA QAEILCIQMQ QEPALPTTPQ LVDHPDDKSF  120
FLPHQYLNFT SSSSSVMQEY SLKRESLIAD WS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435806.15e-80hypothetical protein CICLE_v10032929mg
RefseqXP_006486261.15e-80PREDICTED: LOB domain-containing protein 12
SwissprotQ8LBW31e-62LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A067FN825e-80A0A067FN82_CITSI; Uncharacterized protein
TrEMBLV4TH275e-80V4TH27_9R
STRINGPOPTR_0008s07280.14e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-64LBD family protein